Inference via CLI¶

Command Line Interface (CLI)¶

You can use the CLI to run inference on an image or folder containing several images. To do that, you can use the following command

$ spotiflow predict --input PATH

where PATH can be either an image or a folder. By default, the command will use the general pretrained model. You can specify a different model by using the --pretrained-model flag. Moreover, spots are saved to a subfolder spotiflow_results created inside the input folder (this can be changed with the --out-dir flag). For more information, please refer to the help message of the CLI (spotiflow-predict -h).